Conference Agenda

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Session Overview
Session
Session 2.1: mtDNA maintenance and expression
Time:
Monday, 12/June/2023:
9:00am - 10:45am

Session Chair: Zofia Chrzanowska-Lightowers
Session Chair: Massimo Zeviani
Location: Bologna Congress Center - Sala Europa

Address: Piazza della Costituzione, 4/a, Bologna (BO), Italy

Invited Speakers: M. Falkemberg; A. Filipovska

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Presentations
Invited
ID: 236
Invited Speakers

Initiation of mitochondrial DNA replication in mammalian cells.

Maria Falkenberg

Gothenburg University, Sweden

Bibliography
Maria Falkenberg defended her Ph.D. thesis (2000) at the University of Gothenburg, Sweden, after spending three years as a visiting student with Prof. I.R. Lehman, Stanford University School of Medicine. After postdoctoral work with Prof. Nils-Göran Larsson (2001-2002), she was appointed assistant professor at the Karolinska Institutet (2003). Since 2011, she is professor of medical biochemistry at the University of Gothenburg. The Falkenberg laboratory studies DNA replication in mammalian mitochondria, using in-vitro biochemistry, structural biology and and cell biology to study the underlying enzymatic processes. The laboratory also investigates the molecular consequences of disease-causing mutations affecting mitochondrial DNA replication and develops new, rational therapeutic approaches.


Invited
ID: 680
Invited Speakers

Regulation of mitochondrial gene expression in disease

Aleksandra Filipovska

University of Western Australia, Australia



Oral presentation
ID: 423
mtDNA maintenance and expression

Mitochondrial translation termination at non-canonical stop codons

Annika Krüger1, Cristina Remes2, Dmitrii Igorevich Shiriaev1, Yong Liu1, Henrik Spåhr1, Rolf Wibom1, Ilian Atanassov3, Minh Duc Nguyen1, Barry S. Cooperman2, Joanna Rorbach1,3

1Karolinska Institutet, Stockholm, Sweden; 2University of Pennsylvania, Pennsylvania, USA; 3Max-Planck-Institute for Biology of Ageing, Cologne, Germany

Bibliography
Krüger A, Remes C, Shiriaev DI, Liu Y, Spåhr H, Wibom R, Atanassov I, Nguyen MD, Cooperman BS, Rorbach J. Human mitochondria require mtRF1 for translation termination at non-canonical stop codons. Nat Commun 14, 30 (2023).


Oral presentation
ID: 268
mtDNA maintenance and expression

Pathological variants in TOP3A cause distinct disorders of mitochondrial and nuclear genome stability

Direnis Erdinc1, Alejandro Rodríguez-Luis2,3, Mahmoud R. Fassad2,4, Sarah Mackenzie5, Christopher M. Watson6,7, Sebastian Valenzuela1, Xie Xie1, Katja E. Menger2,3, Kate Sergeant8, Kate Craig2,9, Sila Hopton2,9, Gavin Falkous2,9, Joanna Poulton10, Hector Garcia-Moreno11, Paola Giunti11, Carlos A. de Moura Aschoff12, Jonas A. Morales Saute12,13,14, Amelia J. Kirby15, Camilo Toro16, Lynne Wolfe16, Danica Novacic16, Lior Greenbaum17,18,19, Aviva Eliyahu17,19, Ortal Barel20, Yair Anikster19,21, Robert McFarland2,4, Gráinne S. Gorman2,4, Andrew M. Schaefer2,9, Claes M. Gustafsson1,22, Robert W. Taylor2,4,9, Maria Falkenberg1, Thomas J Nicholls1

1Department of Medical Biochemistry and Cell Biology, University of Gothenburg, P.O. Box 440, SE-405 30 Gothenburg, Sweden; 2Wellcome Centre for Mitochondrial Research, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK; 3Biosciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK; 4Translational and Clinical Research Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK; 5The Newcastle Upon Tyne Hospitals NHS Foundation Trust, Newcastle Upon Tyne, UK; 6North East and Yorkshire Genomic Laboratory Hub, Central Lab, St. James's University Hospital, Leeds, UK; 7Leeds Institute of Medical Research, University of Leeds, St. James's University Hospital, Leeds, UK; 8Oxford Genetics Laboratories, Oxford University Hospitals NHS Foundation Trust, Oxford, UK; 9NHS Highly Specialised Service for Rare Mitochondrial Disorders, Newcastle upon Tyne Hospitals NHS Foundation Trust, Newcastle upon Tyne, NE1 4LP, UK; 10Nuffield Department of Women’s & Reproductive Health, The Women's Centre, University of Oxford, Oxford, UK; 11Ataxia Centre, Department of Clinical and Movement Neurosciences, UCL Queen Square Institute of Neurology, Queen Square, London WC1N 3BG, UK; 12Medical Genetics Service, Hospital de Clínicas de Porto Alegre (HCPA), Porto Alegre, Brazil; 13Department of Internal Medicine, Universidade Federal do Rio Grande do Sul - Porto Alegre, Brazil; 14Graduate Program in Medicine: Medical Sciences, Universidade Federal do Rio Grande do Sul - Porto Alegre, Brazil; 15Department of Pediatrics, Wake Forest School of Medicine, Winston-Salem, NC 27101, USA; 16Undiagnosed Diseases Program, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland, USA; 17The Danek Gertner Institute of Human Genetics, Sheba Medical Center, Tel Hashomer, Israel; 18The Joseph Sagol Neuroscience Center, Sheba Medical Center, Tel Hashomer, Israel; 19The Sackler School of Medicine, Tel Aviv University, Tel Aviv, Israel; 20Genomics Unit, The Center for Cancer Research, Sheba Medical Center, Israel; 21Metabolic Disease Unit, Edmond and Lily Safra Children's Hospital, Sheba Medical Center, Tel Hashomer, Israel; 22Department of Clinical Chemistry, Sahlgrenska University Hospital, Gothenburg, Sweden

Bibliography
Menger et al. (2022). Two type I topoisomerases maintain DNA topology in human mitochondria. Nucleic Acids Research; 50(19):11154-11174.

Tan et al. (2022). The human mitochondrial genome contains a second light strand promoter. Molecular Cell; 82(19): 3646-3660.

Misic et al. (2022). Mammalian RNase H1 directs RNA primer formation for mtDNA replication initiation and is also necessary for mtDNA replication completion. Nucleic Acids Research; 50(15): 8749-8766.

Menger et al. (2021). Controlling the topology of mammalian mitochondrial DNA. Open Biology; 11(9): 210168.

Jiang et al. (2021). The mitochondrial single-stranded DNA binding protein is essential for initiation of mtDNA replication. Science Advances; 7(27): eabf8631.


Oral presentation
ID: 244
mtDNA maintenance and expression

The role of replicative exonucleases in mitochondrial DNA replication and degradation

Christian D Gonzalez, Nadee Nissanka, Carlos T Moraes

University of Miami Miller School of Medicine, United States of America

Bibliography
S27 of IFNα1 Contributes to Its Low Affinity for IFNAR2 and Weak Antiviral Activity

Nikunj Sharma, Anya J. O'Neal, Christian Gonzalez, Megen Wittling, Erisa Gjinaj, Lisa M. Parsons, Debasis Panda, Alexey Khalenkov, Dorothy Scott, Saurav Misra, and Ronald L. Rabin

Journal of Interferon & Cytokine Research 2019 39:5, 283-292


Flash Talk
ID: 127
mtDNA maintenance and expression

Processing of mitochondrial RNA in health and disease: the role of FASTKD5.

Hana Antonicka1, James B. Gibson2, Eric A. Shoubridge1

1The Neuro & McGill University, Montreal, Quebec, Canada; 2Dell School of Medicine, University of Texas at Austin, Austin, TX, USA

Bibliography
1.Arguello T, Peralta S, Antonicka H, Gaidosh G, Diaz F, Tu YT, Garcia S, Shiekhattar R, Barrientos A, Moraes CT. (2021) ATAD3A has a scaffolding role regulating mitochondria inner membrane structure and protein assembly. Cell Rep. 2021 Dec 21;37(12):110139. doi: 10.1016/j.celrep.2021.110139.

2.Go CD, Knight JDR, Rajasekharan A, Rathod B, Hesketh GG, Abe KT, Youn JY, Samavarchi-Tehrani P, Zhang H, Zhu LY, Popiel E, Lambert JP, Coyaud É, Cheung SWT, Rajendran D, Wong CJ, Antonicka H, Pelletier L, Palazzo AF, Shoubridge EA, Raught B, Gingras AC. (2021) A proximity-dependent biotinylation map of a human cell. Nature. 2021 Jul;595(7865):120-124. doi: 10.1038/s41586-021-03592-2.

3.Antonicka H, Lin ZY, Janer A, Aaltonen MJ, Weraarpachai W, Gingras AC, Shoubridge EA. (2020) A High-Density Human Mitochondrial Proximity Interaction Network. Cell Metab. 2020 Sep 1;32(3):479-497.e9. doi: 10.1016/j.cmet.2020.07.017.

4.Maiti P, Antonicka H, Gingras AC, Shoubridge EA, Barrientos A. (2020) Human GTPBP5 (MTG2) fuels mitoribosome large subunit maturation by facilitating 16S rRNA methylation. Nucleic Acids Res. 2020 Aug 20;48(14):7924-7943. doi: 10.1093/nar/gkaa592.

5.Antonicka H, Choquet K, Lin ZY, Gingras AC, Kleinman CL, Shoubridge EA. (2017) A pseudouridine synthase module is essential for mitochondrial protein synthesis and cell viability. EMBO Rep. 2017 Jan;18(1):28-38. doi: 10.15252/embr.201643391.


Flash Talk
ID: 524
mtDNA maintenance and expression

Mechanisms of mtDNA maintenance and segregation in the female germline

Laura Kremer1, Lyuba Bozhilova2,3, Diana Rubalcava-Garcia1, Roberta Filograna1, Mamta Upadhyay1, Camilla Koolmeister1, Patrick Chinnery2,3, Nils-Göran Larsson1

1Karolinska Institutet, Stockholm, Sweden; 2MRC Mitochondrial Biology Unit, Cambridge, United Kingdom; 3Department of Clinical Neurosciences, University of Cambridge, United Kingdom



Flash Talk
ID: 116
mtDNA maintenance and expression

The human Mitochondrial mRNA Structurome reveals Mechanisms of Gene Expression in Physiology and Pathology

Antoni Barrientos1, Conor Moran1, Amir Brivanlou2, Flavia Fontanesi1, Silvi Rouskin2

1University of Miami, United States of America; 2Harvard Medical School, United States of America

Bibliography
1- Structural basis of LRPPRC-SLIRP-1 dependent translation by the
mitoribosome. Vivek Singh, J. Conor Moran, Yuzuru Itoh, Iliana C. Soto, Flavia Fontanesi, Mary Couvillion, Martijn A. Huynen4, Stirling Churchman, Antoni Barrientos*, Alexey Amunts*. Nat Struct Mol Bill. 2023 (in press)
2-Tissue-specific mitochondrial HIGD1C promotes oxygen sensitivity in carotid body chemoreceptors. Timón-Gómez A, Scharr AL, Wong NY, Ni E, Roy A, Liu M, Chau J, Lampert JL, Hireed H, Kim NS, Jan M, Gupta AR, Day RW, Gardner JM, Wilson RJA, Barrientos A, Chang AJ. Elife. 2022 Oct 18;11:e78915. doi: 10.7554/eLife.78915.
2- Coordination of metal center biogenesis in human cytochrome c oxidase.
Nývltová E, Dietz JV, Seravalli J, Khalimonchuk O, Barrientos A.
Nat Commun. 2022 Jun 24;13(1):3615. doi: 10.1038/s41467-022-31413-1.